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Reset changes made for debugging in app BoundaryLayer

Merged Reset changes made for debugging in app BoundaryLayer
irmb/uppsala/VirtualFluids_dev:develop_multiGPUtesting into develop
Merged Anna Wellmann requested to merge irmb/uppsala/VirtualFluids_dev:develop_multiGPUtesting into develop
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apps/gpu/LBM/BoundaryLayer/BoundaryLayer.cpp
+ 58
− 185
@@ -8,7 +8,6 @@
#include <fstream>
#include <exception>
#include <memory>
#include <numeric>
//////////////////////////////////////////////////////////////////////////
@@ -20,7 +19,6 @@
#include "Core/VectorTypes.h"
#include <basics/config/ConfigurationFile.h>
#include "lbm/constants/NumericConstants.h"
#include <logger/Logger.h>
@@ -30,15 +28,12 @@
#include "GridGenerator/grid/GridBuilder/LevelGridBuilder.h"
#include "GridGenerator/grid/GridBuilder/MultipleGridBuilder.h"
#include "GridGenerator/grid/BoundaryConditions/Side.h"
#include "GridGenerator/grid/BoundaryConditions/BoundaryCondition.h"
#include "GridGenerator/grid/GridFactory.h"
#include "geometries/Cuboid/Cuboid.h"
#include "geometries/TriangularMesh/TriangularMesh.h"
#include "GridGenerator/io/SimulationFileWriter/SimulationFileWriter.h"
#include "GridGenerator/io/GridVTKWriter/GridVTKWriter.h"
#include "GridGenerator/io/STLReaderWriter/STLReader.h"
#include "GridGenerator/io/STLReaderWriter/STLWriter.h"
//////////////////////////////////////////////////////////////////////////
@@ -49,28 +44,24 @@
#include "VirtualFluids_GPU/DataStructureInitializer/GridReaderFiles/GridReader.h"
#include "VirtualFluids_GPU/Parameter/Parameter.h"
#include "VirtualFluids_GPU/Output/FileWriter.h"
#include "VirtualFluids_GPU/PreCollisionInteractor/ActuatorLine.h"
#include "VirtualFluids_GPU/PreCollisionInteractor/Probes/PointProbe.h"
#include "VirtualFluids_GPU/PreCollisionInteractor/Probes/PlaneProbe.h"
#include "VirtualFluids_GPU/PreCollisionInteractor/Probes/PlanarAverageProbe.h"
#include "VirtualFluids_GPU/PreCollisionInteractor/Probes/WallModelProbe.h"
#include "VirtualFluids_GPU/Factories/BoundaryConditionFactory.h"
#include "VirtualFluids_GPU/Factories/GridScalingFactory.h"
#include "VirtualFluids_GPU/TurbulenceModels/TurbulenceModelFactory.h"
#include "VirtualFluids_GPU/GPU/CudaMemoryManager.h"
#include "utilities/communication.h"
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
std::string path(".");
std::string simulationName("BoundaryLayer");
std::string simulationName("BoundayLayer");
using namespace vf::lbm::constant;
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
@@ -96,16 +87,8 @@ void multipleLevel(const std::string& configPath)
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////^
SPtr<Parameter> para = std::make_shared<Parameter>(communicator.getNummberOfProcess(), communicator.getPID(), &config);
BoundaryConditionFactory bcFactory = BoundaryConditionFactory();
GridScalingFactory scalingFactory = GridScalingFactory();
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
const int nProcs = communicator.getNummberOfProcess();
const uint procID = vf::gpu::Communicator::getInstance().getPID();
std::vector<uint> devices(10);
std::iota(devices.begin(), devices.end(), 0);
para->setDevices(devices);
para->setMaxDev(nProcs);
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
//
@@ -121,19 +104,19 @@ void multipleLevel(const std::string& configPath)
const real L_x = 6*H;
const real L_y = 4*H;
const real L_z = H;
const real L_z = 1*H;
const real z0 = 0.1f; // roughness length in m
const real u_star = 0.4f; //friction velocity in m/s
const real kappa = 0.4f; // von Karman constant
const real z0 = 0.1; // roughness length in m
const real u_star = 0.4; //friction velocity in m/s
const real kappa = 0.4; // von Karman constant
const real viscosity = 1.56e-5f;
const real viscosity = 1.56e-5;
const real velocity = 0.5f*u_star/kappa*log(H/z0+1.f); //0.5 times max mean velocity at the top in m/s
const real velocity = 0.5*u_star/kappa*log(L_z/z0); //0.5 times max mean velocity at the top in m/s
const real mach =0.1;
const real mach = config.contains("Ma")? config.getValue<real>("Ma"): 0.1;
const uint nodes_per_H = 64;
const uint nodes_per_H = config.contains("nz")? config.getValue<uint>("nz"): 64;
// all in s
const float tStartOut = config.getValue<real>("tStartOut");
@@ -147,7 +130,7 @@ void multipleLevel(const std::string& configPath)
const float tOutProbe = config.getValue<real>("tOutProbe");
const real dx = H/real(nodes_per_H);
const real dx = L_z/real(nodes_per_H);
const real dt = dx * mach / (sqrt(3) * velocity);
@@ -158,13 +141,13 @@ void multipleLevel(const std::string& configPath)
const real pressureGradient = u_star * u_star / H ;
const real pressureGradientLB = pressureGradient * (dt*dt)/dx; // LB units
// VF_LOG_INFO("velocity [dx/dt] = {}", velocityLB);
// VF_LOG_INFO("dt = {}", dt);
// VF_LOG_INFO("dx = {}", dx);
// VF_LOG_INFO("viscosity [10^8 dx^2/dt] = {}", viscosityLB*1e8);
// VF_LOG_INFO("u* /(dx/dt) = {}", u_star*dt/dx);
// VF_LOG_INFO("dpdx = {}", pressureGradient);
// VF_LOG_INFO("dpdx /(dx/dt^2) = {}", pressureGradientLB);
VF_LOG_INFO("velocity [dx/dt] = {}", velocityLB);
VF_LOG_INFO("dt = {}", dt);
VF_LOG_INFO("dx = {}", dx);
VF_LOG_INFO("viscosity [10^8 dx^2/dt] = {}", viscosityLB*1e8);
VF_LOG_INFO("u* /(dx/dt) = {}", u_star*dt/dx);
VF_LOG_INFO("dpdx = {}", pressureGradient);
VF_LOG_INFO("dpdx /(dx/dt^2) = {}", pressureGradientLB);
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
@@ -179,184 +162,74 @@ void multipleLevel(const std::string& configPath)
para->setViscosityRatio( dx*dx/dt );
para->setDensityRatio( 1.0 );
bool useStreams = (nProcs > 1 ? true: false);
para->setUseStreams(true);
para->useReducedCommunicationAfterFtoC = true;
para->setMainKernel("CumulantK17CompChimRedesigned");
para->setMainKernel("TurbulentViscosityCumulantK17CompChim");
para->setIsBodyForce( config.getValue<bool>("bodyForce") );
para->setTimestepStartOut(uint(tStartOut/dt) );
para->setTimestepOut( uint(tOut/dt) );
para->setTimestepEnd( uint(tEnd/dt) );
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
SPtr<TurbulenceModelFactory> tmFactory = std::make_shared<TurbulenceModelFactory>(para);
SPtr<TurbulenceModelFactory> tmFactory = SPtr<TurbulenceModelFactory>( new TurbulenceModelFactory(para) );
tmFactory->readConfigFile( config );
tmFactory->setTurbulenceModel(TurbulenceModel::QR);
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
const real xSplit = L_x/nProcs;
const real overlap = 8.0*dx;
real xMin = procID * xSplit;
real xMax = (procID+1) * xSplit;
real xGridMin = procID * xSplit;
real xGridMax = (procID+1) * xSplit;
real yMin = 0.0;
real yMax = L_y;
real zMin = 0.0;
real zMax = L_z;
bool isFirstSubDomain = (procID == 0 && nProcs > 1)? true: false;
bool isLastSubDomain = (procID == nProcs-1 && nProcs > 1)? true: false;
bool isMidSubDomain = (!isFirstSubDomain && !isLastSubDomain && nProcs > 1)? true: false;
if(isFirstSubDomain || isMidSubDomain)
{
xGridMax += overlap;
xGridMin -= overlap;
}
if(isLastSubDomain || isMidSubDomain)
{
xGridMax += overlap;
xGridMin -= overlap;
}
// tmFactory->setTurbulenceModel(TurbulenceModel::AMD);
// tmFactory->setModelConstant(config.getValue<real>("SGSconstant"));
gridBuilder->addCoarseGrid( xGridMin, 0.0, 0.0,
xGridMax, L_y, L_z, dx);
if(true)// Add refinement
{
gridBuilder->setNumberOfLayers(12, 8);
gridBuilder->addGrid( new Cuboid( 0.3*L_x, 0.2*L_y, 0.1*L_z, L_x*0.7, 0.8*L_y, L_z*0.2) , 1 );
para->setMaxLevel(2);
scalingFactory.setScalingFactory(GridScalingFactory::GridScaling::ScaleCompressible);
}
if(nProcs > 1)
{
gridBuilder->setSubDomainBox(
std::make_shared<BoundingBox>(xMin, xMax, yMin, yMax, zMin, zMax));
gridBuilder->setPeriodicBoundaryCondition(false, true, false);
}
else
{
gridBuilder->setPeriodicBoundaryCondition(true, true, false);
}
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
gridBuilder->buildGrids(lbmOrGks, true); // buildGrids() has to be called before setting the BCs!!!!
gridBuilder->addCoarseGrid(0.0, 0.0, 0.0,
L_x, L_y, L_z, dx);
// gridBuilder->setNumberOfLayers(12, 8);
std::cout << "nProcs: "<< nProcs << "Proc: " << procID << " isFirstSubDomain: " << isFirstSubDomain << " isLastSubDomain: " << isLastSubDomain << " isMidSubDomain: " << isMidSubDomain << std::endl;
if(nProcs > 1){
if (isFirstSubDomain || isMidSubDomain) {
gridBuilder->findCommunicationIndices(CommunicationDirections::PX, lbmOrGks);
gridBuilder->setCommunicationProcess(CommunicationDirections::PX, procID+1);
}
// gridBuilder->addGrid( new Cuboid( 0.0, 0.0, 0.0, L_x, L_y, 0.3*L_z) , 1 );
// para->setMaxLevel(2);
if (isLastSubDomain || isMidSubDomain) {
gridBuilder->findCommunicationIndices(CommunicationDirections::MX, lbmOrGks);
gridBuilder->setCommunicationProcess(CommunicationDirections::MX, procID-1);
}
gridBuilder->setPeriodicBoundaryCondition(true, true, false);
if (isFirstSubDomain) {
gridBuilder->findCommunicationIndices(CommunicationDirections::MX, lbmOrGks);
gridBuilder->setCommunicationProcess(CommunicationDirections::MX, nProcs-1);
}
gridBuilder->buildGrids(lbmOrGks, false); // buildGrids() has to be called before setting the BCs!!!!
if (isLastSubDomain) {
gridBuilder->findCommunicationIndices(CommunicationDirections::PX, lbmOrGks);
gridBuilder->setCommunicationProcess(CommunicationDirections::PX, 0);
}
}
uint samplingOffset = 2;
gridBuilder->setSlipBoundaryCondition(SideType::PZ, 0.0, 0.0, -1.0);
// gridBuilder->setVelocityBoundaryCondition(SideType::MZ, 0.0, 0.0, 0.0);
gridBuilder->setStressBoundaryCondition(SideType::MZ,
0.0, 0.0, 1.0, // wall normals
samplingOffset, z0/dx); // wall model settinng
para->setHasWallModelMonitor(true);
// if(isLastSubDomain){ gridBuilder->setPressureBoundaryCondition(SideType::PX, 0.f); }
// if(isFirstSubDomain){ gridBuilder->setVelocityBoundaryCondition(SideType::MX, 8.0f*dt/dx, 0.0, 0.0);}
// bcFactory.setVelocityBoundaryCondition(BoundaryConditionFactory::VelocityBC::VelocityAndPressureCompressible);
para->setHasWallModelMonitor(true);
bcFactory.setStressBoundaryCondition(BoundaryConditionFactory::StressBC::StressPressureBounceBack);
gridBuilder->setSlipBoundaryCondition(SideType::PZ, 0.0, 0.0, 0.0);
bcFactory.setSlipBoundaryCondition(BoundaryConditionFactory::SlipBC::SlipBounceBack);
bcFactory.setPressureBoundaryCondition(BoundaryConditionFactory::PressureBC::OutflowNonReflective);
real cPi = 3.1415926535897932384626433832795;
para->setInitialCondition([&](real coordX, real coordY, real coordZ, real &rho, real &vx, real &vy, real &vz) {
rho = (real)0.0;
vx = rho = c0o1;
vx = (u_star/0.4f * log(coordZ/z0+c1o1) + c2o1*sin(cPi*c16o1*coordX/L_x)*sin(cPi*c8o1*coordZ/H)/(pow(coordZ/H,c2o1)+c1o1)) * dt/dx;
vy = c2o1*sin(cPi*c16o1*coordX/L_x)*sin(cPi*c8o1*coordZ/H)/(pow(coordZ/H,c2o1)+c1o1) * dt/dx;
vz = c8o1*u_star/0.4f*(sin(cPi*c8o1*coordY/H)*sin(cPi*c8o1*coordZ/H)+sin(cPi*c8o1*coordX/L_x))/(pow(c1o2*L_z-coordZ, c2o1)+c1o1) * dt/dx;
vx = (u_star/0.4 * log(coordZ/z0) + 2.0*sin(cPi*16.0f*coordX/L_x)*sin(cPi*8.0f*coordZ/H)/(pow(coordZ/H,c2o1)+c1o1)) * dt / dx;
vy = 2.0*sin(cPi*16.0f*coordX/L_x)*sin(cPi*8.0f*coordZ/H)/(pow(coordZ/H,c2o1)+c1o1) * dt / dx;
vz = 8.0*u_star/0.4*(sin(cPi*8.0*coordY/H)*sin(cPi*8.0*coordZ/H)+sin(cPi*8.0*coordX/L_x))/(pow(L_z/2.0-coordZ, c2o1)+c1o1) * dt / dx;
});
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
SPtr<PlanarAverageProbe> planarAverageProbe = SPtr<PlanarAverageProbe>( new PlanarAverageProbe("planeProbe", para->getOutputPath(), tStartAveraging/dt, tStartTmpAveraging/dt, tAveraging/dt , tStartOutProbe/dt, tOutProbe/dt, 'z') );
planarAverageProbe->addAllAvailableStatistics();
planarAverageProbe->setFileNameToNOut();
para->addProbe( planarAverageProbe );
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
// if(isFirstSubDomain || nProcs == 1)
// {
// SPtr<PlanarAverageProbe> planarAverageProbe = SPtr<PlanarAverageProbe>( new PlanarAverageProbe("planeProbe", para->getOutputPath(), tStartAveraging/dt, tStartTmpAveraging/dt, tAveraging/dt , tStartOutProbe/dt, tOutProbe/dt, 'z') );
// planarAverageProbe->addAllAvailableStatistics();
// planarAverageProbe->setFileNameToNOut();
// para->addProbe( planarAverageProbe );
// para->setHasWallModelMonitor(true);
// SPtr<WallModelProbe> wallModelProbe = SPtr<WallModelProbe>( new WallModelProbe("wallModelProbe", para->getOutputPath(), tStartAveraging/dt, tStartTmpAveraging/dt, tAveraging/dt/4.0 , tStartOutProbe/dt, tOutProbe/dt) );
// wallModelProbe->addAllAvailableStatistics();
// wallModelProbe->setFileNameToNOut();
// wallModelProbe->setForceOutputToStress(true);
// if(para->getIsBodyForce())
// wallModelProbe->setEvaluatePressureGradient(true);
// para->addProbe( wallModelProbe );
// }
// SPtr<PlaneProbe> planeProbe1 = SPtr<PlaneProbe>( new PlaneProbe("planeProbe_1", para->getOutputPath(), tStartAveraging/dt, 10, tStartOutProbe/dt, tOutProbe/dt) );
// planeProbe1->setProbePlane(100.0, 0.0, 0, dx, L_y, L_z);
// planeProbe1->addAllAvailableStatistics();
// para->addProbe( planeProbe1 );
// if(readPrecursor)
// {
// SPtr<PlaneProbe> planeProbe2 = SPtr<PlaneProbe>( new PlaneProbe("planeProbe_2", para->getOutputPath(), tStartAveraging/dt, 10, tStartOutProbe/dt, tOutProbe/dt) );
// planeProbe2->setProbePlane(1000.0, 0.0, 0, dx, L_y, L_z);
// planeProbe2->addAllAvailableStatistics();
// para->addProbe( planeProbe2 );
// SPtr<PlaneProbe> planeProbe3 = SPtr<PlaneProbe>( new PlaneProbe("planeProbe_3", para->getOutputPath(), tStartAveraging/dt, 10, tStartOutProbe/dt, tOutProbe/dt) );
// planeProbe3->setProbePlane(1500.0, 0.0, 0, dx, L_y, L_z);
// planeProbe3->addAllAvailableStatistics();
// para->addProbe( planeProbe3 );
// SPtr<PlaneProbe> planeProbe4 = SPtr<PlaneProbe>( new PlaneProbe("planeProbe_4", para->getOutputPath(), tStartAveraging/dt, 10, tStartOutProbe/dt, tOutProbe/dt) );
// planeProbe4->setProbePlane(2000.0, 0.0, 0, dx, L_y, L_z);
// planeProbe4->addAllAvailableStatistics();
// para->addProbe( planeProbe4 );
// SPtr<PlaneProbe> planeProbe5 = SPtr<PlaneProbe>( new PlaneProbe("planeProbe_5", para->getOutputPath(), tStartAveraging/dt, 10, tStartOutProbe/dt, tOutProbe/dt) );
// planeProbe5->setProbePlane(2500.0, 0.0, 0, dx, L_y, L_z);
// planeProbe5->addAllAvailableStatistics();
// para->addProbe( planeProbe5 );
// SPtr<PlaneProbe> planeProbe6 = SPtr<PlaneProbe>( new PlaneProbe("planeProbe_6", para->getOutputPath(), tStartAveraging/dt, 10, tStartOutProbe/dt, tOutProbe/dt) );
// planeProbe6->setProbePlane(0.0, L_y/2.0, 0, L_x, dx, L_z);
// planeProbe6->addAllAvailableStatistics();
// para->addProbe( planeProbe6 );
// }
// if(writePrecursor)
// {
// SPtr<PrecursorWriter> precursorWriter = std::make_shared<PrecursorWriter>("precursor", para->getOutputPath()+precursorDirectory, posXPrecursor, 0, L_y, 0, L_z, tStartPrecursor/dt, nTWritePrecursor, useDistributions? OutputVariable::Distributions: OutputVariable::Velocities);
// para->addProbe(precursorWriter);
// }
para->setHasWallModelMonitor(true);
SPtr<WallModelProbe> wallModelProbe = SPtr<WallModelProbe>( new WallModelProbe("wallModelProbe", para->getOutputPath(), tStartAveraging/dt, tStartTmpAveraging/dt, tAveraging/dt/4.0 , tStartOutProbe/dt, tOutProbe/dt) );
wallModelProbe->addAllAvailableStatistics();
wallModelProbe->setFileNameToNOut();
wallModelProbe->setForceOutputToStress(true);
if(para->getIsBodyForce())
wallModelProbe->setEvaluatePressureGradient(true);
para->addProbe( wallModelProbe );
auto cudaMemoryManager = std::make_shared<CudaMemoryManager>(para);
auto gridGenerator = GridProvider::makeGridGenerator(gridBuilder, para, cudaMemoryManager, communicator);
Simulation sim(para, cudaMemoryManager, communicator, *gridGenerator, &bcFactory, tmFactory, &scalingFactory);
Simulation sim(para, cudaMemoryManager, communicator, *gridGenerator, &bcFactory, tmFactory);
sim.run();
}