From 66db3c83fa7aae3cdd6b6a6d72dd7b2a1376225b Mon Sep 17 00:00:00 2001
From: Soeren Peters <peters@irmb.tu-bs.de>
Date: Thu, 10 Sep 2020 13:42:43 +0200
Subject: [PATCH] Set CXX Standard to 14! Move VirtualFluids header to src. Add
CI file and add files, only existing in the open source version.
---
.gitlab-ci.yml | 22 +
CMake/VirtualFluidsMacros.cmake | 10 +-
CMake/cmake_config_files/TESLA01.config.cmake | 2 +-
CMakeLists.txt | 2 +-
apps/cpu/LidDrivenCavity/CMakeLists.txt | 4 +-
apps/cpu/LidDrivenCavity/LidDrivenCavity.cpp | 26 +-
cpu.cmake | 10 +-
gpu.cmake | 7 +
.../geometry3d/CoordinateTransformation3D.h | 10 +-
{apps => src}/cpu/VirtualFluids.h | 47 +-
.../LBM/CumulantK17LBMKernel.cpp | 648 ++++++++++++++++++
.../LBM/CumulantK17LBMKernel.h | 146 ++++
src/gpu/GksGpu/Output/VtkWriter.cpp | 146 ++++
src/gpu/GksGpu/Output/VtkWriter.h | 52 ++
14 files changed, 1088 insertions(+), 44 deletions(-)
create mode 100644 .gitlab-ci.yml
rename {apps => src}/cpu/VirtualFluids.h (83%)
create mode 100644 src/cpu/VirtualFluidsCore/LBM/CumulantK17LBMKernel.cpp
create mode 100644 src/cpu/VirtualFluidsCore/LBM/CumulantK17LBMKernel.h
create mode 100644 src/gpu/GksGpu/Output/VtkWriter.cpp
create mode 100644 src/gpu/GksGpu/Output/VtkWriter.h
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
new file mode 100644
index 000000000..6d12cb41b
--- /dev/null
+++ b/.gitlab-ci.yml
@@ -0,0 +1,22 @@
+image: ubuntu
+
+stages:
+ - build
+
+build:
+ stage: build
+
+ before_script:
+ - export CAB_MACHINE=ELLADAN
+ - export DEBIAN_FRONTEND=noninteractive
+ - apt-get update
+ - apt-get install build-essential -y
+ - apt-get install cmake -y
+ - apt-get install ninja-build -y
+ - apt-get install openmpi-bin -y
+ - apt-get install libomp-dev -y
+ - apt-get install nvidia-cuda-dev nvidia-cuda-toolkit -y
+
+ script:
+ - cmake -S . -B build -DBUILD_VF_CPU:BOOL=ON
+ - cmake --build build --target VirtualFluidsCore
\ No newline at end of file
diff --git a/CMake/VirtualFluidsMacros.cmake b/CMake/VirtualFluidsMacros.cmake
index 83274c2fb..9aeeb49c1 100644
--- a/CMake/VirtualFluidsMacros.cmake
+++ b/CMake/VirtualFluidsMacros.cmake
@@ -46,9 +46,9 @@ endfunction()
#################################################################################
## Add a target, link the libraries and add the compiler flags to the target
-## The name of the target is vf_get_library_name().
##
## parameter:
+## NAME - Name of the target. If not passed the name is vf_get_library_name().
## BUILDTYPE - STATIC; SHARED; EXECUTABLE
## DEPENDS - libraries to link
## FILES - adds these files to the target
@@ -63,10 +63,14 @@ function(vf_add_library)
set( options )
set( oneValueArgs )
- set( multiValueArgs BUILDTYPE DEPENDS FILES FOLDER EXCLUDE)
+ set( multiValueArgs NAME BUILDTYPE DEPENDS FILES FOLDER EXCLUDE)
cmake_parse_arguments( ARG "${options}" "${oneValueArgs}" "${multiValueArgs}" ${ARGN} )
- vf_get_library_name (library_name)
+ if(${ARG_NAME})
+ set(library_name ${ARG_NAME})
+ else()
+ vf_get_library_name (library_name)
+ endif()
status("Configuring the target: ${library_name} (type=${ARG_BUILDTYPE})...")
diff --git a/CMake/cmake_config_files/TESLA01.config.cmake b/CMake/cmake_config_files/TESLA01.config.cmake
index bc3b0e796..dcf273d03 100644
--- a/CMake/cmake_config_files/TESLA01.config.cmake
+++ b/CMake/cmake_config_files/TESLA01.config.cmake
@@ -15,4 +15,4 @@ IF(${USE_METIS})
SET(METIS_INCLUDEDIR "C:/Libraries/metis-5.1.0//include")
SET(METIS_DEBUG_LIBRARY "C:/Libraries/metis-5.1.0/build/libmetis/Debug/metis.lib")
SET(METIS_RELEASE_LIBRARY "C:/Libraries/metis-5.1.0/build/libmetis/Release/metis.lib")
-ENDIF()
+ENDIF()
\ No newline at end of file
diff --git a/CMakeLists.txt b/CMakeLists.txt
index 3cb629f54..a167d96bd 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -13,7 +13,7 @@ cmake_minimum_required(VERSION 3.13..3.18 FATAL_ERROR)
project(VirtualFluids CXX)
-set(CMAKE_CXX_STANDARD 11)
+set(CMAKE_CXX_STANDARD 14)
set(CMAKE_CXX_STANDARD_REQUIRED ON)
set_property(GLOBAL PROPERTY USE_FOLDERS ON)
diff --git a/apps/cpu/LidDrivenCavity/CMakeLists.txt b/apps/cpu/LidDrivenCavity/CMakeLists.txt
index a2518ab60..9527e73ea 100644
--- a/apps/cpu/LidDrivenCavity/CMakeLists.txt
+++ b/apps/cpu/LidDrivenCavity/CMakeLists.txt
@@ -1,6 +1,4 @@
PROJECT(LidDrivenCavity)
-INCLUDE(${APPS_ROOT}/IncludsList.cmake)
-
-vf_add_library(BUILDTYPE binary DEPENDS VirtualFluidsCore VirtualFluidsBasic FILES LidDrivenCavity.cpp)
+vf_add_library(NAME LidDrivenCavityCPU BUILDTYPE binary DEPENDS VirtualFluidsCore basics muparser FILES LidDrivenCavity.cpp)
diff --git a/apps/cpu/LidDrivenCavity/LidDrivenCavity.cpp b/apps/cpu/LidDrivenCavity/LidDrivenCavity.cpp
index 6eb64ffe2..bde6df56d 100644
--- a/apps/cpu/LidDrivenCavity/LidDrivenCavity.cpp
+++ b/apps/cpu/LidDrivenCavity/LidDrivenCavity.cpp
@@ -10,8 +10,8 @@
// \ \| | | | __ __ __ __ ______ _______
// \ | | |_____ | | | | | | | | | _ \ / _____)
// \ | | _____| | | | | | | | | | | \ \ \_______
-// \ | | | | |_____ | \_/ | | | | |_/ / _____ \
-// \ _____| |__| |________| \_______/ |__| |______/ (_______/
+// \ | | | | |_____ | \_/ | | | | |_/ / _____ |
+// \ _____| |__| |________| \_______/ |__| |______/ (_______/
//
// This file is part of VirtualFluids. VirtualFluids is free software: you can
// redistribute it and/or modify it under the terms of the GNU General Public
@@ -26,7 +26,7 @@
// You should have received a copy of the GNU General Public License along
// with VirtualFluids (see COPYING.txt). If not, see <http://www.gnu.org/licenses/>.
//
-//! \file ldc.cpp
+//! \file LidDrivenCavity.cpp
//! \ingroup Applications
//! \author Konstantin Kutscher
//=======================================================================================
@@ -44,7 +44,9 @@ int main(int argc, char* argv[])
//////////////////////////////////////////////////////////////////////////
// Simulation parameters
//////////////////////////////////////////////////////////////////////////
- string path = "d:/temp/LidDrivenCavityClean";
+
+ // set your output path here
+ string path = "./output";
const double L = 1.0;
const double Re = 1000.0;
@@ -52,11 +54,11 @@ int main(int argc, char* argv[])
const double dt = 0.5e-3;
const unsigned int nx = 64;
- const double timeStepOut = 10000;
- const double timeStepEnd = 250000;
+ const double timeStepOut = 1000;
+ const double timeStepEnd = 25000;
// Number of OpenMP threads
- int numOfThreads = 1;
+ int numOfThreads = 4;
//////////////////////////////////////////////////////////////////////////
@@ -84,13 +86,16 @@ int main(int argc, char* argv[])
// set grid spacing
grid->setDeltaX(dx);
// set block size for three dimensions
- grid->setBlockNX(64,64,64);
+ int blockSize = nx / 2;
+ grid->setBlockNX(blockSize,blockSize,blockSize);
// Create simulation bounding box
SPtr<GbObject3D> gridCube(new GbCuboid3D(g_minX1, g_minX2, g_minX3, g_maxX1, g_maxX2, g_maxX3));
GbSystem3D::writeGeoObject(gridCube.get(), path + "/geo/gridCube", WbWriterVtkXmlBinary::getInstance());
- UBLOG(logINFO, "Lid Driven Cavity");
+ UBLOG(logINFO, "Lid Driven Cavity:");
+ UBLOG(logINFO, "Domain size = " << nx << " x "<< nx << " x "<< nx);
+ UBLOG(logINFO, "Block size = " << blockSize << " x "<< blockSize << " x "<< blockSize);
UBLOG(logINFO, "velocity = " << velocity << " m/s");
UBLOG(logINFO, "velocityLB = " << velocityLB);
UBLOG(logINFO, "viscosityLB = " << viscosityLB);
@@ -209,8 +214,9 @@ int main(int argc, char* argv[])
SPtr<CoProcessor> nupsCoProcessor(new NUPSCounterCoProcessor(grid, nupsSch, numOfThreads, comm));
// OpenMP threads control
+#ifdef _OPENMP
omp_set_num_threads(numOfThreads);
-
+#endif
// Create simulation
SPtr<Calculator> calculator(new BasicCalculator(grid, visSch, (int)timeStepEnd));
// Add coprocessors objects to simulation
diff --git a/cpu.cmake b/cpu.cmake
index 1b8d3b383..8a18f999b 100644
--- a/cpu.cmake
+++ b/cpu.cmake
@@ -1,5 +1,3 @@
-CMAKE_MINIMUM_REQUIRED(VERSION 3.10)
-
#workaround for machine with mpi compiler wrapper
#it most define before project
@@ -35,14 +33,11 @@ SET(USE_BOOST OFF CACHE BOOL "include Boost support")
#SET(USE_PYTHON OFF CACHE BOOL "include Python scripting support")
#SET(USE_FETOL OFF CACHE BOOL "include FETOL library support")
SET(USE_INTEL OFF CACHE BOOL "include Intel compiler support")
-SET(USE_GCC OFF CACHE BOOL "include gcc compiler support") #TODO: why do we need to set this manually?
SET(USE_HLRN_LUSTRE OFF CACHE BOOL "include HLRN Lustre support")
SET(USE_DEM_COUPLING OFF CACHE BOOL "PE plugin")
#CAB
include("CMake/CMakeCABMacros.cmake") #TODO: Currently we have to include the CABMacros also here, so that the USE_* are defined in the config files for the cpu version
-#include("CMake/FileUtilities.cmake")
-#include("CMake/VirtualFluidsMacros.cmake")
#MPI
IF((NOT ${CMAKE_CXX_COMPILER} MATCHES mpicxx) AND (NOT ${CMAKE_CXX_COMPILER} MATCHES mpiicpc))# OR NOT ${CMAKE_CXX_COMPILER} MATCHES cc OR NOT ${CMAKE_CXX_COMPILER} MATCHES mpiCC)
@@ -107,9 +102,6 @@ ENDIF()
IF(${USE_MPI})
LIST(APPEND CAB_ADDTIONAL_COMPILER_FLAGS -DVF_MPI)
ENDIF()
-# IF(${USE_FETOL})
-# LIST(APPEND CAB_ADDTIONAL_COMPILER_FLAGS -DVF_FETOL)
-# ENDIF()
IF(${USE_VTK})
LIST(APPEND CAB_ADDTIONAL_COMPILER_FLAGS -DVF_VTK)
ENDIF()
@@ -129,6 +121,8 @@ IF(${USE_INTEL})
SET(CAB_ADDITIONAL_LINK_FLAGS ${CAB_ADDITIONAL_LINK_FLAGS} -parallel)
ENDIF()
+message ("GCC IS : " ${USE_GCC})
+
IF(${USE_GCC})
SET(CAB_ADDITIONAL_LINK_FLAGS ${CAB_ADDITIONAL_LINK_FLAGS} -lgomp)
ENDIF()
diff --git a/gpu.cmake b/gpu.cmake
index 78d21ec95..e9f33a5ea 100644
--- a/gpu.cmake
+++ b/gpu.cmake
@@ -4,6 +4,13 @@ if(UNIX)
set(CMAKE_CXX_STANDARD 14)
endif()
+#############################################################
+### CUDAPATH ###
+#############################################################
+
+# if CMake cannot find CUDA by itself, set the correct paths manually:
+#SET(CUDA_CUT_INCLUDE_DIR "/cluster/cuda/9.0/include;/cluster/cuda/9.0/samples/common/inc" CACHE PATH "CUDA_CUT_INCLUDE_DIR")
+#SET(CUDA_SAMPLE_INCLUDE_DIR "/cluster/cuda/9.0/samples/common/inc" CACHE PATH "CUDA_CUT_INCLUDE_DIR")
#############################################################
### PROJECT SETTINGS ###
diff --git a/src/basics/geometry3d/CoordinateTransformation3D.h b/src/basics/geometry3d/CoordinateTransformation3D.h
index 362da6b62..112f78789 100644
--- a/src/basics/geometry3d/CoordinateTransformation3D.h
+++ b/src/basics/geometry3d/CoordinateTransformation3D.h
@@ -120,11 +120,11 @@ private:
bool active;
bool transformation;
- friend class MPIIOCoProcessor;
- friend class MPIIORestartCoProcessor;
- friend class MPIIOMigrationCoProcessor;
- friend class MPIIOMigrationBECoProcessor;
- friend class CheckpointConverter;
+ friend class MPIIOCoProcessor;
+ friend class MPIIORestartCoProcessor;
+ friend class MPIIOMigrationCoProcessor;
+ friend class MPIIOMigrationBECoProcessor;
+ friend class CheckpointConverter;
};
diff --git a/apps/cpu/VirtualFluids.h b/src/cpu/VirtualFluids.h
similarity index 83%
rename from apps/cpu/VirtualFluids.h
rename to src/cpu/VirtualFluids.h
index fe92dd803..83ebf0494 100644
--- a/apps/cpu/VirtualFluids.h
+++ b/src/cpu/VirtualFluids.h
@@ -1,16 +1,44 @@
+//=======================================================================================
+// ____ ____ __ ______ __________ __ __ __ __
+// \ \ | | | | | _ \ |___ ___| | | | | / \ | |
+// \ \ | | | | | |_) | | | | | | | / \ | |
+// \ \ | | | | | _ / | | | | | | / /\ \ | |
+// \ \ | | | | | | \ \ | | | \__/ | / ____ \ | |____
+// \ \ | | |__| |__| \__\ |__| \________/ /__/ \__\ |_______|
+// \ \ | | ________________________________________________________________
+// \ \ | | | ______________________________________________________________|
+// \ \| | | | __ __ __ __ ______ _______
+// \ | | |_____ | | | | | | | | | _ \ / _____)
+// \ | | _____| | | | | | | | | | | \ \ \_______
+// \ | | | | |_____ | \_/ | | | | |_/ / _____ \
+// \ _____| |__| |________| \_______/ |__| |______/ (_______/
+//
+// This file is part of VirtualFluids. VirtualFluids is free software: you can
+// redistribute it and/or modify it under the terms of the GNU General Public
+// License as published by the Free Software Foundation, either version 3 of
+// the License, or (at your option) any later version.
+//
+// VirtualFluids is distributed in the hope that it will be useful, but WITHOUT
+// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+// FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
+// for more details.
+//
+// You should have received a copy of the GNU General Public License along
+// with VirtualFluids (see COPYING.txt). If not, see <http://www.gnu.org/licenses/>.
+//
+//! \file VirtualFluids.h
+//! \ingroup Applications
+//! \author Konstantin Kutscher
+//=======================================================================================
+
#ifndef VirtualFluids_h__
#define VirtualFluids_h__
//VirtualFluids header files
-
-#if defined VF_FETOL
-#define WIN32_LEAN_AND_MEAN
-#include <JM.h>
-#endif
#ifdef _OPENMP
#include <omp.h>
-#endif
+#endif
#include <basics/PointerDefinitions.h>
@@ -268,11 +296,4 @@
#include <Visitors/RefineCrossAndInsideGbObjectHelper.h>
#include <RefineAroundGbObjectHelper.h>
-#if defined VF_FETOL
- #include <FETOL/FETOLCalculator.h>
- #include <FETOL/FETOLCommunicator.h>
- #include <FETOL/FETOLSetConnectorsBlockVisitor.h>
- #include <FETOL/FETOLTransmitterBondPool.h>
-#endif
-
#endif // VirtualFluids_h__
diff --git a/src/cpu/VirtualFluidsCore/LBM/CumulantK17LBMKernel.cpp b/src/cpu/VirtualFluidsCore/LBM/CumulantK17LBMKernel.cpp
new file mode 100644
index 000000000..b3a3c989b
--- /dev/null
+++ b/src/cpu/VirtualFluidsCore/LBM/CumulantK17LBMKernel.cpp
@@ -0,0 +1,648 @@
+//=======================================================================================
+// ____ ____ __ ______ __________ __ __ __ __
+// \ \ | | | | | _ \ |___ ___| | | | | / \ | |
+// \ \ | | | | | |_) | | | | | | | / \ | |
+// \ \ | | | | | _ / | | | | | | / /\ \ | |
+// \ \ | | | | | | \ \ | | | \__/ | / ____ \ | |____
+// \ \ | | |__| |__| \__\ |__| \________/ /__/ \__\ |_______|
+// \ \ | | ________________________________________________________________
+// \ \ | | | ______________________________________________________________|
+// \ \| | | | __ __ __ __ ______ _______
+// \ | | |_____ | | | | | | | | | _ \ / _____)
+// \ | | _____| | | | | | | | | | | \ \ \_______
+// \ | | | | |_____ | \_/ | | | | |_/ / _____ |
+// \ _____| |__| |________| \_______/ |__| |______/ (_______/
+//
+// This file is part of VirtualFluids. VirtualFluids is free software: you can
+// redistribute it and/or modify it under the terms of the GNU General Public
+// License as published by the Free Software Foundation, either version 3 of
+// the License, or (at your option) any later version.
+//
+// VirtualFluids is distributed in the hope that it will be useful, but WITHOUT
+// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+// FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
+// for more details.
+//
+// You should have received a copy of the GNU General Public License along
+// with VirtualFluids (see COPYING.txt). If not, see <http://www.gnu.org/licenses/>.
+//
+//! \file CumulantK17LBMKernel.cpp
+//! \ingroup LBM
+//! \author Konstantin Kutscher, Martin Geier
+//=======================================================================================
+
+#include "CumulantK17LBMKernel.h"
+#include "D3Q27System.h"
+#include "D3Q27EsoTwist3DSplittedVector.h"
+#include <math.h>
+#include "DataSet3D.h"
+#include "LBMKernel.h"
+#include "Block3D.h"
+#include "BCArray3D.h"
+
+#define PROOF_CORRECTNESS
+
+using namespace UbMath;
+
+//////////////////////////////////////////////////////////////////////////
+CumulantK17LBMKernel::CumulantK17LBMKernel()
+{
+ this->compressible = true;
+}
+//////////////////////////////////////////////////////////////////////////
+CumulantK17LBMKernel::~CumulantK17LBMKernel(void)
+{
+
+}
+//////////////////////////////////////////////////////////////////////////
+void CumulantK17LBMKernel::initDataSet()
+{
+ SPtr<DistributionArray3D> d(new D3Q27EsoTwist3DSplittedVector(nx[0] + 2, nx[1] + 2, nx[2] + 2, -999.9));
+ dataSet->setFdistributions(d);
+}
+//////////////////////////////////////////////////////////////////////////
+SPtr<LBMKernel> CumulantK17LBMKernel::clone()
+{
+ SPtr<LBMKernel> kernel(new CumulantK17LBMKernel());
+ kernel->setNX(nx);
+ std::dynamic_pointer_cast<CumulantK17LBMKernel>(kernel)->initDataSet();
+ kernel->setCollisionFactor(this->collFactor);
+ kernel->setBCProcessor(bcProcessor->clone(kernel));
+ kernel->setWithForcing(withForcing);
+ kernel->setForcingX1(muForcingX1);
+ kernel->setForcingX2(muForcingX2);
+ kernel->setForcingX3(muForcingX3);
+ kernel->setIndex(ix1, ix2, ix3);
+ kernel->setDeltaT(deltaT);
+ kernel->setBlock(block.lock());
+
+ return kernel;
+}
+//////////////////////////////////////////////////////////////////////////
+void CumulantK17LBMKernel::calculate(int step)
+{
+ //////////////////////////////////////////////////////////////////////////
+ //! Cumulant K17 Kernel is based on
+ //! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+ //! and
+ //! <a href="https://doi.org/10.1016/j.jcp.2017.07.004"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.07.004 ]</b></a>
+ //!
+ //! The cumulant kernel is executed in the following steps
+ //!
+ ////////////////////////////////////////////////////////////////////////////////
+ //! - Get node index coordinates from thredIdx, blockIdx, blockDim and gridDim.
+ //!
+ using namespace D3Q27System;
+ using namespace std;
+
+ //initializing of forcing stuff
+ if (withForcing)
+ {
+ muForcingX1.DefineVar("x1", &muX1); muForcingX1.DefineVar("x2", &muX2); muForcingX1.DefineVar("x3", &muX3);
+ muForcingX2.DefineVar("x1", &muX1); muForcingX2.DefineVar("x2", &muX2); muForcingX2.DefineVar("x3", &muX3);
+ muForcingX3.DefineVar("x1", &muX1); muForcingX3.DefineVar("x2", &muX2); muForcingX3.DefineVar("x3", &muX3);
+
+ muDeltaT = deltaT;
+
+ muForcingX1.DefineVar("dt", &muDeltaT);
+ muForcingX2.DefineVar("dt", &muDeltaT);
+ muForcingX3.DefineVar("dt", &muDeltaT);
+
+ muNu = (1.0 / 3.0) * (1.0 / collFactor - 1.0 / 2.0);
+
+ muForcingX1.DefineVar("nu", &muNu);
+ muForcingX2.DefineVar("nu", &muNu);
+ muForcingX3.DefineVar("nu", &muNu);
+
+ LBMReal forcingX1 = 0;
+ LBMReal forcingX2 = 0;
+ LBMReal forcingX3 = 0;
+ }
+ /////////////////////////////////////
+
+ localDistributions = dynamic_pointer_cast<D3Q27EsoTwist3DSplittedVector>(dataSet->getFdistributions())->getLocalDistributions();
+ nonLocalDistributions = dynamic_pointer_cast<D3Q27EsoTwist3DSplittedVector>(dataSet->getFdistributions())->getNonLocalDistributions();
+ restDistributions = dynamic_pointer_cast<D3Q27EsoTwist3DSplittedVector>(dataSet->getFdistributions())->getZeroDistributions();
+
+ SPtr<BCArray3D> bcArray = this->getBCProcessor()->getBCArray();
+
+ const int bcArrayMaxX1 = (int)bcArray->getNX1();
+ const int bcArrayMaxX2 = (int)bcArray->getNX2();
+ const int bcArrayMaxX3 = (int)bcArray->getNX3();
+
+ int minX1 = ghostLayerWidth;
+ int minX2 = ghostLayerWidth;
+ int minX3 = ghostLayerWidth;
+ int maxX1 = bcArrayMaxX1 - ghostLayerWidth;
+ int maxX2 = bcArrayMaxX2 - ghostLayerWidth;
+ int maxX3 = bcArrayMaxX3 - ghostLayerWidth;
+
+ LBMReal omega = collFactor;
+
+ for (int x3 = minX3; x3 < maxX3; x3++)
+ {
+ for (int x2 = minX2; x2 < maxX2; x2++)
+ {
+ for (int x1 = minX1; x1 < maxX1; x1++)
+ {
+ if (!bcArray->isSolid(x1, x2, x3) && !bcArray->isUndefined(x1, x2, x3))
+ {
+ int x1p = x1 + 1;
+ int x2p = x2 + 1;
+ int x3p = x3 + 1;
+ //////////////////////////////////////////////////////////////////////////
+ //////////////////////////////////////////////////////////////////////////
+ //! - Read distributions: style of reading and writing the distributions from/to stored arrays dependent on timestep is based on the esoteric twist algorithm
+ //! <a href="https://doi.org/10.3390/computation5020019"><b>[ M. Geier et al. (2017), DOI:10.3390/computation5020019 ]</b></a>
+ //!
+ ////////////////////////////////////////////////////////////////////////////
+ //////////////////////////////////////////////////////////////////////////
+
+ //E N T
+ //c c c
+ //////////
+ //W S B
+ //a a a
+
+ //Rest is b
+
+ //mfxyz
+ //a - negative
+ //b - null
+ //c - positive
+
+ // a b c
+ //-1 0 1
+
+ LBMReal mfcbb = (*this->localDistributions)(D3Q27System::ET_E, x1, x2, x3);
+ LBMReal mfbcb = (*this->localDistributions)(D3Q27System::ET_N, x1, x2, x3);
+ LBMReal mfbbc = (*this->localDistributions)(D3Q27System::ET_T, x1, x2, x3);
+ LBMReal mfccb = (*this->localDistributions)(D3Q27System::ET_NE, x1, x2, x3);
+ LBMReal mfacb = (*this->localDistributions)(D3Q27System::ET_NW, x1p, x2, x3);
+ LBMReal mfcbc = (*this->localDistributions)(D3Q27System::ET_TE, x1, x2, x3);
+ LBMReal mfabc = (*this->localDistributions)(D3Q27System::ET_TW, x1p, x2, x3);
+ LBMReal mfbcc = (*this->localDistributions)(D3Q27System::ET_TN, x1, x2, x3);
+ LBMReal mfbac = (*this->localDistributions)(D3Q27System::ET_TS, x1, x2p, x3);
+ LBMReal mfccc = (*this->localDistributions)(D3Q27System::ET_TNE, x1, x2, x3);
+ LBMReal mfacc = (*this->localDistributions)(D3Q27System::ET_TNW, x1p, x2, x3);
+ LBMReal mfcac = (*this->localDistributions)(D3Q27System::ET_TSE, x1, x2p, x3);
+ LBMReal mfaac = (*this->localDistributions)(D3Q27System::ET_TSW, x1p, x2p, x3);
+
+ LBMReal mfabb = (*this->nonLocalDistributions)(D3Q27System::ET_W, x1p, x2, x3);
+ LBMReal mfbab = (*this->nonLocalDistributions)(D3Q27System::ET_S, x1, x2p, x3);
+ LBMReal mfbba = (*this->nonLocalDistributions)(D3Q27System::ET_B, x1, x2, x3p);
+ LBMReal mfaab = (*this->nonLocalDistributions)(D3Q27System::ET_SW, x1p, x2p, x3);
+ LBMReal mfcab = (*this->nonLocalDistributions)(D3Q27System::ET_SE, x1, x2p, x3);
+ LBMReal mfaba = (*this->nonLocalDistributions)(D3Q27System::ET_BW, x1p, x2, x3p);
+ LBMReal mfcba = (*this->nonLocalDistributions)(D3Q27System::ET_BE, x1, x2, x3p);
+ LBMReal mfbaa = (*this->nonLocalDistributions)(D3Q27System::ET_BS, x1, x2p, x3p);
+ LBMReal mfbca = (*this->nonLocalDistributions)(D3Q27System::ET_BN, x1, x2, x3p);
+ LBMReal mfaaa = (*this->nonLocalDistributions)(D3Q27System::ET_BSW, x1p, x2p, x3p);
+ LBMReal mfcaa = (*this->nonLocalDistributions)(D3Q27System::ET_BSE, x1, x2p, x3p);
+ LBMReal mfaca = (*this->nonLocalDistributions)(D3Q27System::ET_BNW, x1p, x2, x3p);
+ LBMReal mfcca = (*this->nonLocalDistributions)(D3Q27System::ET_BNE, x1, x2, x3p);
+
+ LBMReal mfbbb = (*this->restDistributions)(x1, x2, x3);
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ //! - Calculate density and velocity using pyramid summation for low round-off errors as in Eq. (J1)-(J3)
+ //! <a href="https://doi.org/10.1016/j.camwa.2015.05.001"><b>[ M. Geier et al. (2015), DOI:10.1016/j.camwa.2015.05.001 ]</b></a>
+ //!
+ LBMReal drho = ((((mfccc + mfaaa) + (mfaca + mfcac)) + ((mfacc + mfcaa) + (mfaac + mfcca))) +
+ (((mfbac + mfbca) + (mfbaa + mfbcc)) + ((mfabc + mfcba) + (mfaba + mfcbc)) + ((mfacb + mfcab) + (mfaab + mfccb))) +
+ ((mfabb + mfcbb) + (mfbab + mfbcb)) + (mfbba + mfbbc)) + mfbbb;
+
+ LBMReal rho = c1 + drho;
+ LBMReal OOrho = c1 / rho;
+ ////////////////////////////////////////////////////////////////////////////////////
+ LBMReal vvx = ((((mfccc - mfaaa) + (mfcac - mfaca)) + ((mfcaa - mfacc) + (mfcca - mfaac))) +
+ (((mfcba - mfabc) + (mfcbc - mfaba)) + ((mfcab - mfacb) + (mfccb - mfaab))) +
+ (mfcbb - mfabb)) / rho;
+ LBMReal vvy = ((((mfccc - mfaaa) + (mfaca - mfcac)) + ((mfacc - mfcaa) + (mfcca - mfaac))) +
+ (((mfbca - mfbac) + (mfbcc - mfbaa)) + ((mfacb - mfcab) + (mfccb - mfaab))) +
+ (mfbcb - mfbab)) / rho;
+ LBMReal vvz = ((((mfccc - mfaaa) + (mfcac - mfaca)) + ((mfacc - mfcaa) + (mfaac - mfcca))) +
+ (((mfbac - mfbca) + (mfbcc - mfbaa)) + ((mfabc - mfcba) + (mfcbc - mfaba))) +
+ (mfbbc - mfbba)) / rho;
+ ////////////////////////////////////////////////////////////////////////////////////
+ //forcing
+ ///////////////////////////////////////////////////////////////////////////////////////////
+ if (withForcing)
+ {
+ muX1 = static_cast<double>(x1 - 1 + ix1 * maxX1);
+ muX2 = static_cast<double>(x2 - 1 + ix2 * maxX2);
+ muX3 = static_cast<double>(x3 - 1 + ix3 * maxX3);
+
+ forcingX1 = muForcingX1.Eval();
+ forcingX2 = muForcingX2.Eval();
+ forcingX3 = muForcingX3.Eval();
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ //! - Add half of the acceleration (body force) to the velocity as in Eq. (42)
+ //! <a href="https://doi.org/10.1016/j.camwa.2015.05.001"><b>[ M. Geier et al. (2015), DOI:10.1016/j.camwa.2015.05.001 ]</b></a>
+ //!
+ vvx += forcingX1 * deltaT * c1o2; // X
+ vvy += forcingX2 * deltaT * c1o2; // Y
+ vvz += forcingX3 * deltaT * c1o2; // Z
+ }
+ ///////////////////////////////////////////////////////////////////////////////////////////
+ ////////////////////////////////////////////////////////////////////////////////////
+ LBMReal oMdrho = c1;
+ ////////////////////////////////////////////////////////////////////////////////////
+ // calculate the square of velocities for this lattice node
+ LBMReal vx2 = vvx * vvx;
+ LBMReal vy2 = vvy * vvy;
+ LBMReal vz2 = vvz * vvz;
+ ////////////////////////////////////////////////////////////////////////////////////
+ //! - Set relaxation limiters for third order cumulants to default value \f$ \lambda=0.001 \f$ according to section 6 in
+ //! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+ //!
+ LBMReal wadjust;
+ LBMReal qudricLimitP = c1o100;
+ LBMReal qudricLimitM = c1o100;
+ LBMReal qudricLimitD = c1o100;
+ ////////////////////////////////////////////////////////////////////////////////////
+ //! - Chimera transform from well conditioned distributions to central moments as defined in Appendix J in
+ //! <a href="https://doi.org/10.1016/j.camwa.2015.05.001"><b>[ M. Geier et al. (2015), DOI:10.1016/j.camwa.2015.05.001 ]</b></a>
+ //! see also Eq. (6)-(14) in
+ //! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+ //!
+ ////////////////////////////////////////////////////////////////////////////////////
+ // Z - Dir
+ forwardInverseChimeraWithK(mfaaa, mfaab, mfaac, vvz, vz2, c36, c1o36);
+ forwardInverseChimeraWithK(mfaba, mfabb, mfabc, vvz, vz2, c9, c1o9);
+ forwardInverseChimeraWithK(mfaca, mfacb, mfacc, vvz, vz2, c36, c1o36);
+ forwardInverseChimeraWithK(mfbaa, mfbab, mfbac, vvz, vz2, c9, c1o9);
+ forwardInverseChimeraWithK(mfbba, mfbbb, mfbbc, vvz, vz2, c9o4, c4o9);
+ forwardInverseChimeraWithK(mfbca, mfbcb, mfbcc, vvz, vz2, c9, c1o9);
+ forwardInverseChimeraWithK(mfcaa, mfcab, mfcac, vvz, vz2, c36, c1o36);
+ forwardInverseChimeraWithK(mfcba, mfcbb, mfcbc, vvz, vz2, c9, c1o9);
+ forwardInverseChimeraWithK(mfcca, mfccb, mfccc, vvz, vz2, c36, c1o36);
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ // Y - Dir
+ forwardInverseChimeraWithK(mfaaa, mfaba, mfaca, vvy, vy2, c6, c1o6);
+ forwardChimera(mfaab, mfabb, mfacb, vvy, vy2);
+ forwardInverseChimeraWithK(mfaac, mfabc, mfacc, vvy, vy2, c18, c1o18);
+ forwardInverseChimeraWithK(mfbaa, mfbba, mfbca, vvy, vy2, c3o2, c2o3);
+ forwardChimera(mfbab, mfbbb, mfbcb, vvy, vy2);
+ forwardInverseChimeraWithK(mfbac, mfbbc, mfbcc, vvy, vy2, c9o2, c2o9);
+ forwardInverseChimeraWithK(mfcaa, mfcba, mfcca, vvy, vy2, c6, c1o6);
+ forwardChimera(mfcab, mfcbb, mfccb, vvy, vy2);
+ forwardInverseChimeraWithK(mfcac, mfcbc, mfccc, vvy, vy2, c18, c1o18);
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ // X - Dir
+ forwardInverseChimeraWithK(mfaaa, mfbaa, mfcaa, vvx, vx2, c1, c1);
+ forwardChimera(mfaba, mfbba, mfcba, vvx, vx2);
+ forwardInverseChimeraWithK(mfaca, mfbca, mfcca, vvx, vx2, c3, c1o3);
+ forwardChimera(mfaab, mfbab, mfcab, vvx, vx2);
+ forwardChimera(mfabb, mfbbb, mfcbb, vvx, vx2);
+ forwardChimera(mfacb, mfbcb, mfccb, vvx, vx2);
+ forwardInverseChimeraWithK(mfaac, mfbac, mfcac, vvx, vx2, c3, c1o3);
+ forwardChimera(mfabc, mfbbc, mfcbc, vvx, vx2);
+ forwardInverseChimeraWithK(mfacc, mfbcc, mfccc, vvx, vx2, c9, c1o9);
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ //! - Setting relaxation rates for non-hydrodynamic cumulants (default values). Variable names and equations according to
+ //! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+ //! => [NAME IN PAPER]=[NAME IN CODE]=[DEFAULT VALUE].
+ //! - Trace of second order cumulants \f$ C_{200}+C_{020}+C_{002} \f$ used to adjust bulk viscosity:\f$\omega_2=OxxPyyPzz=1.0 \f$.
+ //! - Third order cumulants \f$ C_{120}+C_{102} \f$, \f$ C_{210}+C_{012} \f$, \f$ C_{201}+C_{021} \f$: \f$\omega_3=OxyyPxzz\f$ set according to Eq. (111) with simplifications assuming \f$\omega_2=1.0\f$.
+ //! - Third order cumulants \f$ C_{120}-C_{102} \f$, \f$ C_{210}-C_{012} \f$, \f$ C_{201}-C_{021} \f$: \f$\omega_4 = OxyyMxzz\f$ set according to Eq. (112) with simplifications assuming \f$\omega_2 = 1.0\f$.
+ //! - Third order cumulants \f$ C_{111} \f$: \f$\omega_5 = Oxyz\f$ set according to Eq. (113) with simplifications assuming \f$\omega_2 = 1.0\f$ (modify for different bulk viscosity).
+ //! - Fourth order cumulants \f$ C_{220} \f$, \f$ C_{202} \f$, \f$ C_{022} \f$, \f$ C_{211} \f$, \f$ C_{121} \f$, \f$ C_{112} \f$: for simplification all set to the same default value \f$ \omega_6=\omega_7=\omega_8=O4=1.0 \f$.
+ //! - Fifth order cumulants \f$ C_{221}\f$, \f$C_{212}\f$, \f$C_{122}\f$: \f$\omega_9=O5=1.0\f$.
+ //! - Sixth order cumulant \f$ C_{222}\f$: \f$\omega_{10}=O6=1.0\f$.
+ //!
+ ////////////////////////////////////////////////////////////
+ //2.
+ LBMReal OxxPyyPzz = c1;
+ ////////////////////////////////////////////////////////////
+ //3.
+ LBMReal OxyyPxzz = c8 * (-c2 + omega) * ( c1 + c2*omega) / (-c8 - c14*omega + c7*omega*omega);
+ LBMReal OxyyMxzz = c8 * (-c2 + omega) * (-c7 + c4*omega) / (c56 - c50*omega + c9*omega*omega);
+ LBMReal Oxyz = c24 * (-c2 + omega) * (-c2 - c7*omega + c3*omega*omega) / (c48 + c152*omega - c130*omega*omega + c29*omega*omega*omega);
+ ////////////////////////////////////////////////////////////
+ //4.
+ LBMReal O4 = c1;
+ ////////////////////////////////////////////////////////////
+ //5.
+ LBMReal O5 = c1;
+ ////////////////////////////////////////////////////////////
+ //6.
+ LBMReal O6 = c1;
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ //! - A and B: parameters for fourth order convergence of the diffusion term according to Eq. (114) and (115)
+ //! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+ //! with simplifications assuming \f$\omega_2 = 1.0\f$ (modify for different bulk viscosity).
+ //!
+ LBMReal A = (c4 + c2*omega - c3*omega*omega) / (c2 - c7*omega + c5*omega*omega);
+ LBMReal B = (c4 + c28*omega - c14*omega*omega) / (c6 - c21*omega + c15*omega*omega);
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ //! - Compute cumulants from central moments according to Eq. (20)-(23) in
+ //! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+ //!
+ ////////////////////////////////////////////////////////////
+ //4.
+ LBMReal CUMcbb = mfcbb - ((mfcaa + c1o3) * mfabb + c2 * mfbba * mfbab) * OOrho;
+ LBMReal CUMbcb = mfbcb - ((mfaca + c1o3) * mfbab + c2 * mfbba * mfabb) * OOrho;
+ LBMReal CUMbbc = mfbbc - ((mfaac + c1o3) * mfbba + c2 * mfbab * mfabb) * OOrho;
+
+ LBMReal CUMcca = mfcca - (((mfcaa * mfaca + c2 * mfbba * mfbba) + c1o3 * (mfcaa + mfaca)) * OOrho - c1o9 * (drho * OOrho));
+ LBMReal CUMcac = mfcac - (((mfcaa * mfaac + c2 * mfbab * mfbab) + c1o3 * (mfcaa + mfaac)) * OOrho - c1o9 * (drho * OOrho));
+ LBMReal CUMacc = mfacc - (((mfaac * mfaca + c2 * mfabb * mfabb) + c1o3 * (mfaac + mfaca)) * OOrho - c1o9 * (drho * OOrho));
+ ////////////////////////////////////////////////////////////
+ //5.
+ LBMReal CUMbcc = mfbcc - ((mfaac * mfbca + mfaca * mfbac + c4 * mfabb * mfbbb + c2 * (mfbab * mfacb + mfbba * mfabc)) + c1o3 * (mfbca + mfbac)) * OOrho;
+ LBMReal CUMcbc = mfcbc - ((mfaac * mfcba + mfcaa * mfabc + c4 * mfbab * mfbbb + c2 * (mfabb * mfcab + mfbba * mfbac)) + c1o3 * (mfcba + mfabc)) * OOrho;
+ LBMReal CUMccb = mfccb - ((mfcaa * mfacb + mfaca * mfcab + c4 * mfbba * mfbbb + c2 * (mfbab * mfbca + mfabb * mfcba)) + c1o3 * (mfacb + mfcab)) * OOrho;
+ ////////////////////////////////////////////////////////////
+ //6.
+ LBMReal CUMccc = mfccc + ((-c4 * mfbbb * mfbbb
+ - (mfcaa * mfacc + mfaca * mfcac + mfaac * mfcca)
+ - c4 * (mfabb * mfcbb + mfbab * mfbcb + mfbba * mfbbc)
+ - c2 * (mfbca * mfbac + mfcba * mfabc + mfcab * mfacb)) * OOrho
+ + (c4 * (mfbab * mfbab * mfaca + mfabb * mfabb * mfcaa + mfbba * mfbba * mfaac)
+ + c2 * (mfcaa * mfaca * mfaac)
+ + c16 * mfbba * mfbab * mfabb) * OOrho * OOrho
+ - c1o3 * (mfacc + mfcac + mfcca) * OOrho
+ - c1o9 * (mfcaa + mfaca + mfaac) * OOrho
+ + (c2 * (mfbab * mfbab + mfabb * mfabb + mfbba * mfbba)
+ + (mfaac * mfaca + mfaac * mfcaa + mfaca * mfcaa) + c1o3 * (mfaac + mfaca + mfcaa)) * OOrho * OOrho * c2o3
+ + c1o27 * ((drho * drho - drho) * OOrho * OOrho));
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ //! - Compute linear combinations of second and third order cumulants
+ //!
+ ////////////////////////////////////////////////////////////
+ //2.
+ LBMReal mxxPyyPzz = mfcaa + mfaca + mfaac;
+ LBMReal mxxMyy = mfcaa - mfaca;
+ LBMReal mxxMzz = mfcaa - mfaac;
+ ////////////////////////////////////////////////////////////
+ //3.
+ LBMReal mxxyPyzz = mfcba + mfabc;
+ LBMReal mxxyMyzz = mfcba - mfabc;
+
+ LBMReal mxxzPyyz = mfcab + mfacb;
+ LBMReal mxxzMyyz = mfcab - mfacb;
+
+ LBMReal mxyyPxzz = mfbca + mfbac;
+ LBMReal mxyyMxzz = mfbca - mfbac;
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ //incl. correction
+ ////////////////////////////////////////////////////////////
+ //! - Compute velocity gradients from second order cumulants according to Eq. (27)-(32)
+ //! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+ //! Further explanations of the correction in viscosity in Appendix H of
+ //! <a href="https://doi.org/10.1016/j.camwa.2015.05.001"><b>[ M. Geier et al. (2015), DOI:10.1016/j.camwa.2015.05.001 ]</b></a>
+ //! Note that the division by rho is omitted here as we need rho times the gradients later.
+ //!
+ LBMReal Dxy = -c3 * omega * mfbba;
+ LBMReal Dxz = -c3 * omega * mfbab;
+ LBMReal Dyz = -c3 * omega * mfabb;
+ LBMReal dxux = c1o2 * (-omega) * (mxxMyy + mxxMzz) + c1o2 * OxxPyyPzz * (mfaaa - mxxPyyPzz);
+ LBMReal dyuy = dxux + omega * c3o2 * mxxMyy;
+ LBMReal dzuz = dxux + omega * c3o2 * mxxMzz;
+ ////////////////////////////////////////////////////////////
+ //! - Relaxation of second order cumulants with correction terms according to Eq. (33)-(35) in
+ //! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+ //!
+ mxxPyyPzz += OxxPyyPzz * (mfaaa - mxxPyyPzz) - c3 * (c1 - c1o2 * OxxPyyPzz) * (vx2 * dxux + vy2 * dyuy + vz2 * dzuz);
+ mxxMyy += omega * (-mxxMyy) - c3 * (c1 + c1o2 * (-omega)) * (vx2 * dxux - vy2 * dyuy);
+ mxxMzz += omega * (-mxxMzz) - c3 * (c1 + c1o2 * (-omega)) * (vx2 * dxux - vz2 * dzuz);
+
+ /////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
+ ////no correction
+ //mxxPyyPzz += OxxPyyPzz*(mfaaa - mxxPyyPzz);
+ //mxxMyy += -(-omega) * (-mxxMyy);
+ //mxxMzz += -(-omega) * (-mxxMzz);
+ /////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
+ mfabb += omega * (-mfabb);
+ mfbab += omega * (-mfbab);
+ mfbba += omega * (-mfbba);
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ //relax
+ //////////////////////////////////////////////////////////////////////////
+ // incl. limiter
+ //! - Relaxation of third order cumulants including limiter according to Eq. (116)-(123)
+ //! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+ //!
+ wadjust = Oxyz + (c1 - Oxyz) * abs(mfbbb) / (abs(mfbbb) + qudricLimitD);
+ mfbbb += wadjust * (-mfbbb);
+ wadjust = OxyyPxzz + (c1 - OxyyPxzz) * abs(mxxyPyzz) / (abs(mxxyPyzz) + qudricLimitP);
+ mxxyPyzz += wadjust * (-mxxyPyzz);
+ wadjust = OxyyMxzz + (c1 - OxyyMxzz) * abs(mxxyMyzz) / (abs(mxxyMyzz) + qudricLimitM);
+ mxxyMyzz += wadjust * (-mxxyMyzz);
+ wadjust = OxyyPxzz + (c1 - OxyyPxzz) * abs(mxxzPyyz) / (abs(mxxzPyyz) + qudricLimitP);
+ mxxzPyyz += wadjust * (-mxxzPyyz);
+ wadjust = OxyyMxzz + (c1 - OxyyMxzz) * abs(mxxzMyyz) / (abs(mxxzMyyz) + qudricLimitM);
+ mxxzMyyz += wadjust * (-mxxzMyyz);
+ wadjust = OxyyPxzz + (c1 - OxyyPxzz) * abs(mxyyPxzz) / (abs(mxyyPxzz) + qudricLimitP);
+ mxyyPxzz += wadjust * (-mxyyPxzz);
+ wadjust = OxyyMxzz + (c1 - OxyyMxzz) * abs(mxyyMxzz) / (abs(mxyyMxzz) + qudricLimitM);
+ mxyyMxzz += wadjust * (-mxyyMxzz);
+ //////////////////////////////////////////////////////////////////////////
+ // no limiter
+ //mfbbb += OxyyMxzz * (-mfbbb);
+ //mxxyPyzz += OxyyPxzz * (-mxxyPyzz);
+ //mxxyMyzz += OxyyMxzz * (-mxxyMyzz);
+ //mxxzPyyz += OxyyPxzz * (-mxxzPyyz);
+ //mxxzMyyz += OxyyMxzz * (-mxxzMyyz);
+ //mxyyPxzz += OxyyPxzz * (-mxyyPxzz);
+ //mxyyMxzz += OxyyMxzz * (-mxyyMxzz);
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ //! - Compute inverse linear combinations of second and third order cumulants
+ //!
+ mfcaa = c1o3 * (mxxMyy + mxxMzz + mxxPyyPzz);
+ mfaca = c1o3 * (-c2 * mxxMyy + mxxMzz + mxxPyyPzz);
+ mfaac = c1o3 * (mxxMyy - c2 * mxxMzz + mxxPyyPzz);
+
+ mfcba = (mxxyMyzz + mxxyPyzz) * c1o2;
+ mfabc = (-mxxyMyzz + mxxyPyzz) * c1o2;
+ mfcab = (mxxzMyyz + mxxzPyyz) * c1o2;
+ mfacb = (-mxxzMyyz + mxxzPyyz) * c1o2;
+ mfbca = (mxyyMxzz + mxyyPxzz) * c1o2;
+ mfbac = (-mxyyMxzz + mxyyPxzz) * c1o2;
+ //////////////////////////////////////////////////////////////////////////
+
+ //////////////////////////////////////////////////////////////////////////
+ //4.
+ // no limiter
+ //! - Relax fourth order cumulants to modified equilibrium for fourth order convergence of diffusion according to Eq. (43)-(48)
+ //! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+ //!
+ CUMacc = -O4 * (c1 / omega - c1o2) * (dyuy + dzuz) * c2o3 * A + (c1 - O4) * (CUMacc);
+ CUMcac = -O4 * (c1 / omega - c1o2) * (dxux + dzuz) * c2o3 * A + (c1 - O4) * (CUMcac);
+ CUMcca = -O4 * (c1 / omega - c1o2) * (dyuy + dxux) * c2o3 * A + (c1 - O4) * (CUMcca);
+ CUMbbc = -O4 * (c1 / omega - c1o2) * Dxy * c1o3 * B + (c1 - O4) * (CUMbbc);
+ CUMbcb = -O4 * (c1 / omega - c1o2) * Dxz * c1o3 * B + (c1 - O4) * (CUMbcb);
+ CUMcbb = -O4 * (c1 / omega - c1o2) * Dyz * c1o3 * B + (c1 - O4) * (CUMcbb);
+
+ //////////////////////////////////////////////////////////////////////////
+ //5.
+ CUMbcc += O5 * (-CUMbcc);
+ CUMcbc += O5 * (-CUMcbc);
+ CUMccb += O5 * (-CUMccb);
+
+ //////////////////////////////////////////////////////////////////////////
+ //6.
+ CUMccc += O6 * (-CUMccc);
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ //! - Compute central moments from post collision cumulants according to Eq. (53)-(56) in
+ //! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+ //!
+
+ //////////////////////////////////////////////////////////////////////////
+ //4.
+ mfcbb = CUMcbb + c1o3 * ((c3 * mfcaa + c1) * mfabb + c6 * mfbba * mfbab) * OOrho;
+ mfbcb = CUMbcb + c1o3 * ((c3 * mfaca + c1) * mfbab + c6 * mfbba * mfabb) * OOrho;
+ mfbbc = CUMbbc + c1o3 * ((c3 * mfaac + c1) * mfbba + c6 * mfbab * mfabb) * OOrho;
+
+ mfcca = CUMcca + (((mfcaa * mfaca + c2 * mfbba * mfbba) * c9 + c3 * (mfcaa + mfaca)) * OOrho - (drho * OOrho)) * c1o9;
+ mfcac = CUMcac + (((mfcaa * mfaac + c2 * mfbab * mfbab) * c9 + c3 * (mfcaa + mfaac)) * OOrho - (drho * OOrho)) * c1o9;
+ mfacc = CUMacc + (((mfaac * mfaca + c2 * mfabb * mfabb) * c9 + c3 * (mfaac + mfaca)) * OOrho - (drho * OOrho)) * c1o9;
+
+ //////////////////////////////////////////////////////////////////////////
+ //5.
+ mfbcc = CUMbcc + c1o3 * (c3 * (mfaac * mfbca + mfaca * mfbac + c4 * mfabb * mfbbb + c2 * (mfbab * mfacb + mfbba * mfabc)) + (mfbca + mfbac)) * OOrho;
+ mfcbc = CUMcbc + c1o3 * (c3 * (mfaac * mfcba + mfcaa * mfabc + c4 * mfbab * mfbbb + c2 * (mfabb * mfcab + mfbba * mfbac)) + (mfcba + mfabc)) * OOrho;
+ mfccb = CUMccb + c1o3 * (c3 * (mfcaa * mfacb + mfaca * mfcab + c4 * mfbba * mfbbb + c2 * (mfbab * mfbca + mfabb * mfcba)) + (mfacb + mfcab)) * OOrho;
+
+ //////////////////////////////////////////////////////////////////////////
+ //6.
+ mfccc = CUMccc - ((-c4 * mfbbb * mfbbb
+ - (mfcaa * mfacc + mfaca * mfcac + mfaac * mfcca)
+ - c4 * (mfabb * mfcbb + mfbab * mfbcb + mfbba * mfbbc)
+ - c2 * (mfbca * mfbac + mfcba * mfabc + mfcab * mfacb)) * OOrho
+ + (c4 * (mfbab * mfbab * mfaca + mfabb * mfabb * mfcaa + mfbba * mfbba * mfaac)
+ + c2 * (mfcaa * mfaca * mfaac)
+ + c16 * mfbba * mfbab * mfabb) * OOrho * OOrho
+ - c1o3 * (mfacc + mfcac + mfcca) * OOrho
+ - c1o9 * (mfcaa + mfaca + mfaac) * OOrho
+ + (c2 * (mfbab * mfbab + mfabb * mfabb + mfbba * mfbba)
+ + (mfaac * mfaca + mfaac * mfcaa + mfaca * mfcaa) + c1o3 * (mfaac + mfaca + mfcaa)) * OOrho * OOrho * c2o3
+ + c1o27 * ((drho * drho - drho) * OOrho * OOrho));
+
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ //! - Add acceleration (body force) to first order cumulants according to Eq. (85)-(87) in
+ //! <a href="https://doi.org/10.1016/j.camwa.2015.05.001"><b>[ M. Geier et al. (2015), DOI:10.1016/j.camwa.2015.05.001 ]</b></a>
+ //!
+ mfbaa = -mfbaa;
+ mfaba = -mfaba;
+ mfaab = -mfaab;
+ ////////////////////////////////////////////////////////////////////////////////////
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ //! - Chimera transform from central moments to well conditioned distributions as defined in Appendix J in
+ //! <a href="https://doi.org/10.1016/j.camwa.2015.05.001"><b>[ M. Geier et al. (2015), DOI:10.1016/j.camwa.2015.05.001 ]</b></a>
+ //! see also Eq. (88)-(96) in
+ //! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+ //!
+ ////////////////////////////////////////////////////////////////////////////////////
+ // X - Dir
+ backwardInverseChimeraWithK(mfaaa, mfbaa, mfcaa, vvx, vx2, c1, c1);
+ backwardChimera(mfaba, mfbba, mfcba, vvx, vx2);
+ backwardInverseChimeraWithK(mfaca, mfbca, mfcca, vvx, vx2, c3, c1o3);
+ backwardChimera(mfaab, mfbab, mfcab, vvx, vx2);
+ backwardChimera(mfabb, mfbbb, mfcbb, vvx, vx2);
+ backwardChimera(mfacb, mfbcb, mfccb, vvx, vx2);
+ backwardInverseChimeraWithK(mfaac, mfbac, mfcac, vvx, vx2, c3, c1o3);
+ backwardChimera(mfabc, mfbbc, mfcbc, vvx, vx2);
+ backwardInverseChimeraWithK(mfacc, mfbcc, mfccc, vvx, vx2, c9, c1o9);
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ // Y - Dir
+ backwardInverseChimeraWithK(mfaaa, mfaba, mfaca, vvy, vy2, c6, c1o6);
+ backwardChimera(mfaab, mfabb, mfacb, vvy, vy2);
+ backwardInverseChimeraWithK(mfaac, mfabc, mfacc, vvy, vy2, c18, c1o18);
+ backwardInverseChimeraWithK(mfbaa, mfbba, mfbca, vvy, vy2, c3o2, c2o3);
+ backwardChimera(mfbab, mfbbb, mfbcb, vvy, vy2);
+ backwardInverseChimeraWithK(mfbac, mfbbc, mfbcc, vvy, vy2, c9o2, c2o9);
+ backwardInverseChimeraWithK(mfcaa, mfcba, mfcca, vvy, vy2, c6, c1o6);
+ backwardChimera(mfcab, mfcbb, mfccb, vvy, vy2);
+ backwardInverseChimeraWithK(mfcac, mfcbc, mfccc, vvy, vy2, c18, c1o18);
+
+ ////////////////////////////////////////////////////////////////////////////////////
+ // Z - Dir
+ backwardInverseChimeraWithK(mfaaa, mfaab, mfaac, vvz, vz2, c36, c1o36);
+ backwardInverseChimeraWithK(mfaba, mfabb, mfabc, vvz, vz2, c9, c1o9);
+ backwardInverseChimeraWithK(mfaca, mfacb, mfacc, vvz, vz2, c36, c1o36);
+ backwardInverseChimeraWithK(mfbaa, mfbab, mfbac, vvz, vz2, c9, c1o9);
+ backwardInverseChimeraWithK(mfbba, mfbbb, mfbbc, vvz, vz2, c9o4, c4o9);
+ backwardInverseChimeraWithK(mfbca, mfbcb, mfbcc, vvz, vz2, c9, c1o9);
+ backwardInverseChimeraWithK(mfcaa, mfcab, mfcac, vvz, vz2, c36, c1o36);
+ backwardInverseChimeraWithK(mfcba, mfcbb, mfcbc, vvz, vz2, c9, c1o9);
+ backwardInverseChimeraWithK(mfcca, mfccb, mfccc, vvz, vz2, c36, c1o36);
+ ////////////////////////////////////////////////////////////////////////////////////
+
+ //////////////////////////////////////////////////////////////////////////
+ //proof correctness
+ //////////////////////////////////////////////////////////////////////////
+#ifdef PROOF_CORRECTNESS
+ LBMReal drho_post = (mfaaa + mfaac + mfaca + mfcaa + mfacc + mfcac + mfccc + mfcca)
+ + (mfaab + mfacb + mfcab + mfccb) + (mfaba + mfabc + mfcba + mfcbc) + (mfbaa + mfbac + mfbca + mfbcc)
+ + (mfabb + mfcbb) + (mfbab + mfbcb) + (mfbba + mfbbc) + mfbbb;
+ LBMReal dif = drho - drho_post;
+#ifdef SINGLEPRECISION
+ if (dif > 10.0E-7 || dif < -10.0E-7)
+#else
+ if (dif > 10.0E-15 || dif < -10.0E-15)
+#endif
+ {
+ UB_THROW(UbException(UB_EXARGS, "rho=" + UbSystem::toString(drho) + ", rho_post=" + UbSystem::toString(drho_post)
+ + " dif=" + UbSystem::toString(dif)
+ + " rho is not correct for node " + UbSystem::toString(x1) + "," + UbSystem::toString(x2) + "," + UbSystem::toString(x3)
+ + " in " + block.lock()->toString() + " step = " + UbSystem::toString(step)));
+ }
+#endif
+ ////////////////////////////////////////////////////////////////////////////////////
+ //! - Write distributions: style of reading and writing the distributions from/to stored arrays dependent on timestep is based on the esoteric twist algorithm
+ //! <a href="https://doi.org/10.3390/computation5020019"><b>[ M. Geier et al. (2017), DOI:10.3390/computation5020019 ]</b></a>
+ //!
+ (*this->localDistributions)(D3Q27System::ET_E, x1, x2, x3) = mfabb;
+ (*this->localDistributions)(D3Q27System::ET_N, x1, x2, x3) = mfbab;
+ (*this->localDistributions)(D3Q27System::ET_T, x1, x2, x3) = mfbba;
+ (*this->localDistributions)(D3Q27System::ET_NE, x1, x2, x3) = mfaab;
+ (*this->localDistributions)(D3Q27System::ET_NW, x1p, x2, x3) = mfcab;
+ (*this->localDistributions)(D3Q27System::ET_TE, x1, x2, x3) = mfaba;
+ (*this->localDistributions)(D3Q27System::ET_TW, x1p, x2, x3) = mfcba;
+ (*this->localDistributions)(D3Q27System::ET_TN, x1, x2, x3) = mfbaa;
+ (*this->localDistributions)(D3Q27System::ET_TS, x1, x2p, x3) = mfbca;
+ (*this->localDistributions)(D3Q27System::ET_TNE, x1, x2, x3) = mfaaa;
+ (*this->localDistributions)(D3Q27System::ET_TNW, x1p, x2, x3) = mfcaa;
+ (*this->localDistributions)(D3Q27System::ET_TSE, x1, x2p, x3) = mfaca;
+ (*this->localDistributions)(D3Q27System::ET_TSW, x1p, x2p, x3) = mfcca;
+
+ (*this->nonLocalDistributions)(D3Q27System::ET_W, x1p, x2, x3) = mfcbb;
+ (*this->nonLocalDistributions)(D3Q27System::ET_S, x1, x2p, x3) = mfbcb;
+ (*this->nonLocalDistributions)(D3Q27System::ET_B, x1, x2, x3p) = mfbbc;
+ (*this->nonLocalDistributions)(D3Q27System::ET_SW, x1p, x2p, x3) = mfccb;
+ (*this->nonLocalDistributions)(D3Q27System::ET_SE, x1, x2p, x3) = mfacb;
+ (*this->nonLocalDistributions)(D3Q27System::ET_BW, x1p, x2, x3p) = mfcbc;
+ (*this->nonLocalDistributions)(D3Q27System::ET_BE, x1, x2, x3p) = mfabc;
+ (*this->nonLocalDistributions)(D3Q27System::ET_BS, x1, x2p, x3p) = mfbcc;
+ (*this->nonLocalDistributions)(D3Q27System::ET_BN, x1, x2, x3p) = mfbac;
+ (*this->nonLocalDistributions)(D3Q27System::ET_BSW, x1p, x2p, x3p) = mfccc;
+ (*this->nonLocalDistributions)(D3Q27System::ET_BSE, x1, x2p, x3p) = mfacc;
+ (*this->nonLocalDistributions)(D3Q27System::ET_BNW, x1p, x2, x3p) = mfcac;
+ (*this->nonLocalDistributions)(D3Q27System::ET_BNE, x1, x2, x3p) = mfaac;
+
+ (*this->restDistributions)(x1, x2, x3) = mfbbb;
+ //////////////////////////////////////////////////////////////////////////
+
+ }
+ }
+ }
+ }
+}
+//////////////////////////////////////////////////////////////////////////
+
diff --git a/src/cpu/VirtualFluidsCore/LBM/CumulantK17LBMKernel.h b/src/cpu/VirtualFluidsCore/LBM/CumulantK17LBMKernel.h
new file mode 100644
index 000000000..49a8da4ac
--- /dev/null
+++ b/src/cpu/VirtualFluidsCore/LBM/CumulantK17LBMKernel.h
@@ -0,0 +1,146 @@
+//=======================================================================================
+// ____ ____ __ ______ __________ __ __ __ __
+// \ \ | | | | | _ \ |___ ___| | | | | / \ | |
+// \ \ | | | | | |_) | | | | | | | / \ | |
+// \ \ | | | | | _ / | | | | | | / /\ \ | |
+// \ \ | | | | | | \ \ | | | \__/ | / ____ \ | |____
+// \ \ | | |__| |__| \__\ |__| \________/ /__/ \__\ |_______|
+// \ \ | | ________________________________________________________________
+// \ \ | | | ______________________________________________________________|
+// \ \| | | | __ __ __ __ ______ _______
+// \ | | |_____ | | | | | | | | | _ \ / _____)
+// \ | | _____| | | | | | | | | | | \ \ \_______
+// \ | | | | |_____ | \_/ | | | | |_/ / _____ |
+// \ _____| |__| |________| \_______/ |__| |______/ (_______/
+//
+// This file is part of VirtualFluids. VirtualFluids is free software: you can
+// redistribute it and/or modify it under the terms of the GNU General Public
+// License as published by the Free Software Foundation, either version 3 of
+// the License, or (at your option) any later version.
+//
+// VirtualFluids is distributed in the hope that it will be useful, but WITHOUT
+// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+// FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
+// for more details.
+//
+// You should have received a copy of the GNU General Public License along
+// with VirtualFluids (see COPYING.txt). If not, see <http://www.gnu.org/licenses/>.
+//
+//! \file CumulantK17LBMKernel.h
+//! \ingroup LBM
+//! \author Konstantin Kutscher, Martin Geier
+//=======================================================================================
+
+#ifndef CumulantK17LBMKernel_h__
+#define CumulantK17LBMKernel_h__
+
+#include "LBMKernel.h"
+#include "BCProcessor.h"
+#include "D3Q27System.h"
+#include "basics/utilities/UbTiming.h"
+#include "basics/container/CbArray4D.h"
+#include "basics/container/CbArray3D.h"
+
+//! \brief Compressible cumulant LBM kernel.
+//! \details LBM implementation that use Cascaded Cumulant Lattice Boltzmann method for D3Q27 model
+//!
+//! The model is publisched in
+//! <a href="http://dx.doi.org/10.1016/j.jcp.2017.05.040"><b>[ Geier et al., (2017), 10.1016/j.jcp.2017.05.040]</b></a>,
+//! <a href="http://dx.doi.org/10.1016/j.jcp.2017.07.004"><b>[ Geier et al., (2017), 10.1016/j.jcp.2017.07.004]</b></a>
+//!
+class CumulantK17LBMKernel : public LBMKernel
+{
+public:
+ CumulantK17LBMKernel();
+ virtual ~CumulantK17LBMKernel(void);
+ virtual void calculate(int step);
+ virtual SPtr<LBMKernel> clone();
+
+protected:
+ inline void forwardInverseChimeraWithK(LBMReal& mfa, LBMReal& mfb, LBMReal& mfc, LBMReal vv, LBMReal v2, LBMReal Kinverse, LBMReal K);
+ inline void backwardInverseChimeraWithK(LBMReal& mfa, LBMReal& mfb, LBMReal& mfc, LBMReal vv, LBMReal v2, LBMReal Kinverse, LBMReal K);
+ inline void forwardChimera(LBMReal& mfa, LBMReal& mfb, LBMReal& mfc, LBMReal vv, LBMReal v2);
+ inline void backwardChimera(LBMReal& mfa, LBMReal& mfb, LBMReal& mfc, LBMReal vv, LBMReal v2);
+
+ virtual void initDataSet();
+ LBMReal f[D3Q27System::ENDF + 1];
+
+ CbArray4D<LBMReal, IndexerX4X3X2X1>::CbArray4DPtr localDistributions;
+ CbArray4D<LBMReal, IndexerX4X3X2X1>::CbArray4DPtr nonLocalDistributions;
+ CbArray3D<LBMReal, IndexerX3X2X1>::CbArray3DPtr restDistributions;
+
+ mu::value_type muX1, muX2, muX3;
+ mu::value_type muDeltaT;
+ mu::value_type muNu;
+ LBMReal forcingX1;
+ LBMReal forcingX2;
+ LBMReal forcingX3;
+};
+
+////////////////////////////////////////////////////////////////////////////////
+//! \brief forward chimera transformation \ref forwardInverseChimeraWithK
+//! Transformation from distributions to central moments according to Eq. (6)-(14) in
+//! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+//! Modified for lower round-off errors.
+////////////////////////////////////////////////////////////////////////////////
+inline void CumulantK17LBMKernel::forwardInverseChimeraWithK(LBMReal& mfa, LBMReal& mfb, LBMReal& mfc, LBMReal vv, LBMReal v2, LBMReal Kinverse, LBMReal K)
+{
+ using namespace UbMath;
+ LBMReal m2 = mfa + mfc;
+ LBMReal m1 = mfc - mfa;
+ LBMReal m0 = m2 + mfb;
+ mfa = m0;
+ m0 *= Kinverse;
+ m0 += c1;
+ mfb = (m1 * Kinverse - m0 * vv) * K;
+ mfc = ((m2 - c2 * m1 * vv) * Kinverse + v2 * m0) * K;
+}
+////////////////////////////////////////////////////////////////////////////////
+//! \brief backward chimera transformation \ref backwardInverseChimeraWithK
+//! Transformation from central moments to distributions according to Eq. (57)-(65) in
+//! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+//! Modified for lower round-off errors.
+////////////////////////////////////////////////////////////////////////////////
+inline void CumulantK17LBMKernel::backwardInverseChimeraWithK(LBMReal& mfa, LBMReal& mfb, LBMReal& mfc, LBMReal vv, LBMReal v2, LBMReal Kinverse, LBMReal K)
+{
+ using namespace UbMath;
+ LBMReal m0 = (((mfc - mfb) * c1o2 + mfb * vv) * Kinverse + (mfa * Kinverse + c1) * (v2 - vv) * c1o2) * K;
+ LBMReal m1 = (((mfa - mfc) - c2 * mfb * vv) * Kinverse + (mfa * Kinverse + c1) * (-v2)) * K;
+ mfc = (((mfc + mfb) * c1o2 + mfb * vv) * Kinverse + (mfa * Kinverse + c1) * (v2 + vv) * c1o2) * K;
+ mfa = m0;
+ mfb = m1;
+}
+////////////////////////////////////////////////////////////////////////////////
+//! \brief forward chimera transformation \ref forwardChimera
+//! Transformation from distributions to central moments according to Eq. (6)-(14) in
+//! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+//! for \f$ K_{abc}=0 \f$. This is to avoid unnessary floating point operations.
+//! Modified for lower round-off errors.
+////////////////////////////////////////////////////////////////////////////////
+inline void CumulantK17LBMKernel::forwardChimera(LBMReal& mfa, LBMReal& mfb, LBMReal& mfc, LBMReal vv, LBMReal v2)
+{
+ using namespace UbMath;
+ LBMReal m1 = (mfa + mfc) + mfb;
+ LBMReal m2 = mfc - mfa;
+ mfc = (mfc + mfa) + (v2 * m1 - c2 * vv * m2);
+ mfb = m2 - vv * m1;
+ mfa = m1;
+}
+////////////////////////////////////////////////////////////////////////////////
+//! \brief backward chimera transformation \ref backwardChimera
+//! Transformation from central moments to distributions according to Eq. (57)-(65) in
+//! <a href="https://doi.org/10.1016/j.jcp.2017.05.040"><b>[ M. Geier et al. (2017), DOI:10.1016/j.jcp.2017.05.040 ]</b></a>
+//! for \f$ K_{abc}=0 \f$. This is to avoid unnessary floating point operations.
+//! Modified for lower round-off errors.
+////////////////////////////////////////////////////////////////////////////////
+inline void CumulantK17LBMKernel::backwardChimera(LBMReal& mfa, LBMReal& mfb, LBMReal& mfc, LBMReal vv, LBMReal v2)
+{
+ using namespace UbMath;
+ LBMReal ma = (mfc + mfa * (v2 - vv)) * c1o2 + mfb * (vv - c1o2);
+ LBMReal mb = ((mfa - mfc) - mfa * v2) - c2 * mfb * vv;
+ mfc = (mfc + mfa * (v2 + vv)) * c1o2 + mfb * (vv + c1o2);
+ mfb = mb;
+ mfa = ma;
+}
+
+#endif // CumulantK17LBMKernel_h__
\ No newline at end of file
diff --git a/src/gpu/GksGpu/Output/VtkWriter.cpp b/src/gpu/GksGpu/Output/VtkWriter.cpp
new file mode 100644
index 000000000..a1a0ab9f6
--- /dev/null
+++ b/src/gpu/GksGpu/Output/VtkWriter.cpp
@@ -0,0 +1,146 @@
+//=======================================================================================
+// ____ ____ __ ______ __________ __ __ __ __
+// \ \ | | | | | _ \ |___ ___| | | | | / \ | |
+// \ \ | | | | | |_) | | | | | | | / \ | |
+// \ \ | | | | | _ / | | | | | | / /\ \ | |
+// \ \ | | | | | | \ \ | | | \__/ | / ____ \ | |____
+// \ \ | | |__| |__| \__\ |__| \________/ /__/ \__\ |_______|
+// \ \ | | ________________________________________________________________
+// \ \ | | | ______________________________________________________________|
+// \ \| | | | __ __ __ __ ______ _______
+// \ | | |_____ | | | | | | | | | _ \ / _____)
+// \ | | _____| | | | | | | | | | | \ \ \_______
+// \ | | | | |_____ | \_/ | | | | |_/ / _____ |
+// \ _____| |__| |________| \_______/ |__| |______/ (_______/
+//
+// This file is part of VirtualFluids. VirtualFluids is free software: you can
+// redistribute it and/or modify it under the terms of the GNU General Public
+// License as published by the Free Software Foundation, either version 3 of
+// the License, or (at your option) any later version.
+//
+// VirtualFluids is distributed in the hope that it will be useful, but WITHOUT
+// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+// FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
+// for more details.
+//
+// You should have received a copy of the GNU General Public License along
+// with VirtualFluids (see COPYING.txt). If not, see <http://www.gnu.org/licenses/>.
+//
+//! \file VtkWriter.cpp
+//! \ingroup Output
+//! \author Stephan Lenz
+//=======================================================================================
+#include "VtkWriter.h"
+
+#include <vector>
+#include <memory>
+
+#include "Core/Logger/Logger.h"
+
+#include "basics/utilities/UbTuple.h"
+#include "basics/writer/WbWriterVtkXmlBinary.h"
+
+#include "DataBase/DataBase.h"
+#include "Parameters/Parameters.h"
+
+#include "FlowStateData/FlowStateData.cuh"
+#include "FlowStateData/FlowStateDataConversion.cuh"
+#include "FlowStateData/AccessDeviceData.cuh"
+
+void VtkWriter::write(std::shared_ptr<DataBase> dataBase, Parameters parameters, std::string filename)
+{
+ *logging::out << logging::Logger::INFO_INTERMEDIATE << "Write " << filename << ".vtu" << " ... \n";
+
+ //////////////////////////////////////////////////////////////////////////
+
+ std::vector< UbTupleFloat3 > nodes;
+ std::vector< UbTupleInt8 > cells;
+
+ nodes.resize( dataBase->numberOfNodes );
+ cells.resize( dataBase->numberOfCells );
+
+ for( uint nodeIdx = 0; nodeIdx < dataBase->numberOfNodes; nodeIdx++ )
+ {
+ Vec3& node = dataBase->nodeCoordinates[ nodeIdx ];
+
+ nodes[nodeIdx] = makeUbTuple( node.x, node.y, node.z );
+ }
+
+ for( uint cellIdx = 0; cellIdx < dataBase->numberOfCells; cellIdx++ )
+ {
+ cells[cellIdx] = makeUbTuple( (int)dataBase->cellToNode[ cellIdx ][ 0 ],
+ (int)dataBase->cellToNode[ cellIdx ][ 1 ],
+ (int)dataBase->cellToNode[ cellIdx ][ 2 ],
+ (int)dataBase->cellToNode[ cellIdx ][ 3 ],
+ (int)dataBase->cellToNode[ cellIdx ][ 4 ],
+ (int)dataBase->cellToNode[ cellIdx ][ 5 ],
+ (int)dataBase->cellToNode[ cellIdx ][ 6 ],
+ (int)dataBase->cellToNode[ cellIdx ][ 7 ] );
+ }
+
+ //////////////////////////////////////////////////////////////////////////
+
+ std::vector< std::string > cellDataNames;
+ cellDataNames.push_back("Press"); // 0
+ cellDataNames.push_back("Rho"); // 1
+ cellDataNames.push_back("Vx"); // 2
+ cellDataNames.push_back("Vy"); // 3
+ cellDataNames.push_back("Vz"); // 4
+ cellDataNames.push_back("Temperature"); // 5
+ cellDataNames.push_back("Geometry"); // 6
+#ifdef USE_PASSIVE_SCALAR
+ cellDataNames.push_back("S_1"); // 7
+ cellDataNames.push_back("S_2"); // 8
+#endif
+
+ //////////////////////////////////////////////////////////////////////////
+
+ std::vector< std::vector< double > > cellData(cellDataNames.size());
+
+ for( auto& i : cellData ) i.resize( dataBase->numberOfCells );
+
+ for( uint cellIdx = 0; cellIdx < dataBase->numberOfCells; cellIdx++ )
+ {
+ ConservedVariables cons;
+
+ cons.rho = dataBase->dataHost[ RHO__(cellIdx, dataBase->numberOfCells) ];
+ cons.rhoU = dataBase->dataHost[ RHO_U(cellIdx, dataBase->numberOfCells) ];
+ cons.rhoV = dataBase->dataHost[ RHO_V(cellIdx, dataBase->numberOfCells) ];
+ cons.rhoW = dataBase->dataHost[ RHO_W(cellIdx, dataBase->numberOfCells) ];
+ cons.rhoE = dataBase->dataHost[ RHO_E(cellIdx, dataBase->numberOfCells) ];
+#ifdef USE_PASSIVE_SCALAR
+ cons.rhoS_1 = dataBase->dataHost[ RHO_S_1(cellIdx, dataBase->numberOfCells) ];
+ cons.rhoS_2 = dataBase->dataHost[ RHO_S_2(cellIdx, dataBase->numberOfCells) ];
+#endif // USE_PASSIVE_SCALAR
+
+ PrimitiveVariables prim = toPrimitiveVariables(cons, parameters.K);
+
+ real p = 0.5 * prim.rho / prim.lambda;
+
+#ifdef USE_PASSIVE_SCALAR
+ real T = getT(prim);
+#else // USE_PASSIVE_SCALAR
+ real T = 1.0 / prim.lambda;
+#endif // USE_PASSIVE_SCALAR
+
+ cellData[0][cellIdx] = p;
+ cellData[1][cellIdx] = prim.rho;
+ cellData[2][cellIdx] = prim.U;
+ cellData[3][cellIdx] = prim.V;
+ cellData[4][cellIdx] = prim.W;
+ cellData[5][cellIdx] = T;
+ cellData[6][cellIdx] = dataBase->isGhostCell(cellIdx);
+#ifdef USE_PASSIVE_SCALAR
+ cellData[7][cellIdx] = prim.S_1;
+ cellData[8][cellIdx] = prim.S_2;
+#endif
+ }
+
+ //////////////////////////////////////////////////////////////////////////
+
+ WbWriterVtkXmlBinary::getInstance()->writeOctsWithCellData(filename, nodes, cells, cellDataNames, cellData);
+
+ //////////////////////////////////////////////////////////////////////////
+
+ *logging::out << logging::Logger::INFO_INTERMEDIATE << "done!\n";
+}
diff --git a/src/gpu/GksGpu/Output/VtkWriter.h b/src/gpu/GksGpu/Output/VtkWriter.h
new file mode 100644
index 000000000..0596fc7bd
--- /dev/null
+++ b/src/gpu/GksGpu/Output/VtkWriter.h
@@ -0,0 +1,52 @@
+//=======================================================================================
+// ____ ____ __ ______ __________ __ __ __ __
+// \ \ | | | | | _ \ |___ ___| | | | | / \ | |
+// \ \ | | | | | |_) | | | | | | | / \ | |
+// \ \ | | | | | _ / | | | | | | / /\ \ | |
+// \ \ | | | | | | \ \ | | | \__/ | / ____ \ | |____
+// \ \ | | |__| |__| \__\ |__| \________/ /__/ \__\ |_______|
+// \ \ | | ________________________________________________________________
+// \ \ | | | ______________________________________________________________|
+// \ \| | | | __ __ __ __ ______ _______
+// \ | | |_____ | | | | | | | | | _ \ / _____)
+// \ | | _____| | | | | | | | | | | \ \ \_______
+// \ | | | | |_____ | \_/ | | | | |_/ / _____ |
+// \ _____| |__| |________| \_______/ |__| |______/ (_______/
+//
+// This file is part of VirtualFluids. VirtualFluids is free software: you can
+// redistribute it and/or modify it under the terms of the GNU General Public
+// License as published by the Free Software Foundation, either version 3 of
+// the License, or (at your option) any later version.
+//
+// VirtualFluids is distributed in the hope that it will be useful, but WITHOUT
+// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+// FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
+// for more details.
+//
+// You should have received a copy of the GNU General Public License along
+// with VirtualFluids (see COPYING.txt). If not, see <http://www.gnu.org/licenses/>.
+//
+//! \file VtkWriter.h
+//! \ingroup Output
+//! \author Stephan Lenz
+//=======================================================================================
+#ifndef VTK_WRITER_H
+#define VTK_WRITER_H
+
+#include <memory>
+#include <string>
+
+#include "GksGpu_export.h"
+
+struct DataBase;
+struct Parameters;
+
+class GKSGPU_EXPORT VtkWriter
+{
+public:
+ static void write( std::shared_ptr<DataBase> dataBase,
+ Parameters parameters,
+ std::string filename );
+};
+
+#endif
\ No newline at end of file
--
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